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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7294892_7298999_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7294892 - 7298999
Intron Length:
4108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CGCTTGTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CGCTCCTTAACC
Flanking Amino Acid:
VKATLKDPEEGLWGLVNNAG
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
68.8
42.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
65.5
0.35
1
60.9
40.2
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
77.2
0.84
1.3
75.07
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005372
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044679
7291221 - 7311563
20343
ENSAPLT00000019479
7289306 - 7311563
22258
ENSAPLT00000005557
7290697 - 7311563
20867