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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7312458_7314679_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7312458 - 7314679
Intron Length:
2222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
ATTTTTTTAACA
Flanking Amino Acid:
LNFKDPGNGFRPVKRFCFPL
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
84.7
0.78
0.9
81.5
34.3
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
81.8
1
0.9
85.09
27.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005410
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005592
7311444 - 7324355
12912