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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7314753_7316117_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7314753 - 7316117
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAG
U12 Branch Point Sequence:
TTCCATCGCATT
Flanking Amino Acid:
SRSYASEVDQIGSRAVLITG
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
63.2
0.33
1.5
71.6
36.4
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
37.1
-0.9
2
55.68
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005410
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005592
7311444 - 7324355
12912