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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7316229_7320385_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7316229 - 7320385
Intron Length:
4157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
TTGGCCAGATTC
Flanking Amino Acid:
FIVYAGCLQKDKGDGGSKDL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
78.6
0.64
0.7
70.6
30.5
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
43.6
-0.5
2
55.9
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005410
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005592
7311444 - 7324355
12912