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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7320528_7322309_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7320528 - 7322309
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTGCA
5'SS Class:
major
3'SS Sequence:
TTTTATCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTGCTTGATT
Flanking Amino Acid:
VNSSLEDPEKGLWGLVNNAG
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
67.1
38.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.1
0.81
0.7
81.8
29.8
Minor 5ss
27.9
-2.5
3.1
33.2
41.8
Minor BPS
66.2
0.59
1.8
82.6
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005410
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005592
7311444 - 7324355
12912