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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7322463_7323464_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7322463 - 7323464
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GGCCCCCGCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAG
U12 Branch Point Sequence:
TGTGCTCTACCT
Flanking Amino Acid:
AFLPLIRRSKGRVVNISSMM
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
32.9
Major BPS
62.2
0.3
1.5
71.4
36.6
Major PPT
52.1
0.05
0.9
42.6
33.3
Minor 5ss
28.5
-2.5
3.2
31.7
42.6
Minor BPS
49.1
0.01
2
72.99
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005410
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005592
7311444 - 7324355
12912