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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7361458_7361653_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7361458 - 7361653
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CCGTGCTCAGCG
Flanking Amino Acid:
MPVRKQDTQRALRLLE
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
76.6
0.6
0.9
69.4
36.8
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
41.6
-0.7
2.2
42.86
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005499
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005775
7361439 - 7494306
132868