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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7361786_7378053_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7361786 - 7378053
Intron Length:
16268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCACATCATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTACCAT
U12 Branch Point Sequence:
TTTCCCACATCA
Flanking Amino Acid:
FQSNLFQALIDIQEFYEVTL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
70.8
39.4
Major BPS
65.6
0.39
1.3
75.1
39.4
Major PPT
57.8
0.18
0.9
55.5
33.8
Minor 5ss
32.3
-2
3.6
48.7
47
Minor BPS
48.8
-0
2.1
70.7
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005499
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025530
7360996 - 7509059
148064
ENSAPLT00000018942
7360996 - 7509738
148743
ENSAPLT00000018613
7360996 - 7509738
148743
ENSAPLT00000005775
7361439 - 7494306
132868