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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7414612_7447733_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7414612 - 7447733
Intron Length:
33122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
TGGTGATTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTT
Flanking Amino Acid:
VSHSHISPVKPTEAVPSSSP
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
100
1.24
0.5
100
0
Major PPT
70.2
0.46
1
66.7
44.2
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
68.3
0.65
1.8
89.23
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005499
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025530
7360996 - 7509059
148064
ENSAPLT00000018942
7360996 - 7509738
148743
ENSAPLT00000018613
7360996 - 7509738
148743
ENSAPLT00000005775
7361439 - 7494306
132868