About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_74179_76665_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74179 - 76665
Intron Length:
2487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
GGCCTTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAGTT
Flanking Amino Acid:
IINSLASKMQVDFWQPDYVT
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.6
0.6
0.9
72.8
37.5
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
57.8
0.32
1.8
78.09
38.2

Associated Gene:

Gene:
CPB1
Ensembl Gene ID:
ENSAPLG00000014834
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022744
54238 - 80561
26324
ENSAPLT00000015506
54238 - 76917
22680
ENSAPLT00000038325
54238 - 128396
74159