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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7451014_7454191_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7451014 - 7454191
Intron Length:
3178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGCCTA
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AATCCTCTAAGT
Flanking Amino Acid:
NTDSLETPTYVNGTDADYEY
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
71
40.9
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
86.4
0.82
0.7
85.4
29.4
Minor 5ss
43.9
-0.7
3.1
61.1
43.6
Minor BPS
49.4
0.04
1.9
69.95
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005499
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018613
7360996 - 7509738
148743
ENSAPLT00000005775
7361439 - 7494306
132868
ENSAPLT00000025530
7360996 - 7509059
148064
ENSAPLT00000018942
7360996 - 7509738
148743