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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7454243_7455222_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7454243 - 7455222
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACATGC
5'SS Class:
major
3'SS Sequence:
CTTCTAACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AAATGCTTAATT
Flanking Amino Acid:
YEYEEITLERGNSGLGFSIA
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
57.8
42.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.4
0.64
0.8
74.9
33.6
Minor 5ss
43.4
-0.7
2.9
51
45.7
Minor BPS
64.7
0.54
1.7
76.62
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005499
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025530
7360996 - 7509059
148064
ENSAPLT00000018942
7360996 - 7509738
148743
ENSAPLT00000018613
7360996 - 7509738
148743
ENSAPLT00000005775
7361439 - 7494306
132868