About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7455348_7456698_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7455348 - 7456698
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGATGA
5'SS Class:
major
3'SS Sequence:
TTGCTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TGAACATGAATG
Flanking Amino Acid:
GGAAAQDGRLRVNDCILRVN
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
61.7
39.6
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
74.1
0.54
0.9
66.1
40.8
Minor 5ss
43.9
-0.7
2.9
56.2
48
Minor BPS
47.3
-0.3
1.8
52.63
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005499
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005775
7361439 - 7494306
132868
ENSAPLT00000025530
7360996 - 7509059
148064
ENSAPLT00000018942
7360996 - 7509738
148743
ENSAPLT00000018613
7360996 - 7509738
148743