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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7456869_7457552_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7456869 - 7457552
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTATCTTTAAGC
Flanking Amino Acid:
VEIKLVKGPKGLGFSIAGGV
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74.4
41.9
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
73.8
0.54
1
71
38.4
Minor 5ss
41.2
-1
2.5
51.1
45.4
Minor BPS
72.4
0.68
1.6
78.94
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005499
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018613
7360996 - 7509738
148743
ENSAPLT00000005775
7361439 - 7494306
132868
ENSAPLT00000025530
7360996 - 7509059
148064
ENSAPLT00000018942
7360996 - 7509738
148743