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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7487614_7488267_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7487614 - 7488267
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GCTAATTTAACT
Flanking Amino Acid:
DEIGVIPSKRRVEKKERARL
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
72.4
0.5
1
69.8
36.6
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
61.9
0.45
1.6
74.46
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005499
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005775
7361439 - 7494306
132868
ENSAPLT00000025530
7360996 - 7509059
148064
ENSAPLT00000018942
7360996 - 7509738
148743
ENSAPLT00000018613
7360996 - 7509738
148743