About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7493592_7496800_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7493592 - 7496800
Intron Length:
3209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
GTTGCAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGTTCCTTATTT
Flanking Amino Acid:
QSEQETSDIDQHVTSNASDS
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.3
73.1
43.9
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
72.5
0.51
1
67.4
42.7
Minor 5ss
41.2
-1
2.8
56.1
41.3
Minor BPS
75.6
0.88
1.5
88.81
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005499
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018613
7360996 - 7509738
148743