About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7506194_7508952_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7506194 - 7508952
Intron Length:
2759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
TTATGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
ATTGCCACATTA
Flanking Amino Acid:
LEQEFTEHFTAIVQGDTLEE
Intron Amino Acid Position:
1108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
85.8
0.81
0.8
80.8
36.6
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
44.1
-0.4
2
58.95
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005499
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025530
7360996 - 7509059
148064
ENSAPLT00000018942
7360996 - 7509738
148743
ENSAPLT00000018613
7360996 - 7509738
148743