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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_751119_774559_F

Intron Information:

Intron Rank:
142944
Intron Class:
major
Intron Phase:
Intron Coordinates:
751119 - 774559
Intron Length:
23441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TGAAACCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCCCCTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
60.3
0.23
1.1
52
42.4
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
61.2
0.33
1.6
70.51
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027035
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018867
750287 - 774657
24371