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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7518287_7519146_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7518287 - 7519146
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGCTTATTAATA
Flanking Amino Acid:
EQYYDYSGAFRCLAEDAGAV
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
71
0.47
0.9
70.8
39.5
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
61.5
0.36
1.6
68.66
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006097
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006376
7514785 - 7528554
13770