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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7520066_7520479_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7520066 - 7520479
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
TTTAACATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTTTCTTTAACA
Flanking Amino Acid:
VIFQLLNQGQQRFNDAGAKF
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
59.7
39.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
77.8
0.62
0.9
70.2
39.7
Minor 5ss
32.6
-2
3.4
42
39
Minor BPS
85.1
1.1
1
86.93
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006097
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006376
7514785 - 7528554
13770