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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7520661_7521521_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7520661 - 7521521
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
CAATTTTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TGAACTGTAATA
Flanking Amino Acid:
AMEGLSCDPNTLPESLNWCV
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
39.3
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
79.1
0.65
0.9
73.5
36.5
Minor 5ss
44.1
-0.6
2.9
63.9
41.5
Minor BPS
49.1
-0
2
61.48
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006097
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006376
7514785 - 7528554
13770