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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7521674_7522068_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7521674 - 7522068
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGC
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTTTTTCACA
Flanking Amino Acid:
TKEECMELIQKKESDVVALG
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
64.1
43.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
42.8
-0.8
3.2
58.8
46.1
Minor BPS
63.6
0.42
1.7
75.16
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006097
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006376
7514785 - 7528554
13770