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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7523173_7524494_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7523173 - 7524494
Intron Length:
1322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTT
Flanking Amino Acid:
IKPKDCNIPQAVSEFFSASC
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.6
0.71
1
87.1
30.6
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
57.6
0.32
1.8
76.35
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006097
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006376
7514785 - 7528554
13770