About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7608858_7674274_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7608858 - 7674274
Intron Length:
65417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAGAC
U12 Branch Point Sequence:
CTTTCTTTCTCT
Flanking Amino Acid:
MIVGYVTAFQEAFESLLRLA
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
55.4
0.14
1
52.4
34.3
Major PPT
78.4
0.64
0.8
76.6
32
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
45
-0.3
3.6
79.06
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000805
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036119
7586512 - 7947259
360748
ENSAPLT00000020834
7570459 - 7947259
376801
ENSAPLT00000044431
7586512 - 7781406
194895
ENSAPLT00000036712
7586512 - 7947116
360605