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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_76742_76846_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76742 - 76846
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACCTTTTTAAAA
Flanking Amino Acid:
SAYPNNLAFDGHMVFRVILQ
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.7
35.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91
0.92
0.6
89
20
Minor 5ss
43
-0.8
2.6
51.2
45.5
Minor BPS
59.3
0.29
1.4
61.82
38.8

Associated Gene:

Gene:
CPB1
Ensembl Gene ID:
ENSAPLG00000014834
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015506
54238 - 76917
22680