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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7715728_7720062_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7715728 - 7720062
Intron Length:
4335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCTA
5'SS Class:
major
3'SS Sequence:
CGGCCTATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGATGCTTATTC
Flanking Amino Acid:
MAHASLNNKRSSLPLKASKN
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
68.9
43.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
68.4
0.42
1
58.2
41.9
Minor 5ss
47
-0.3
2.9
65.2
46
Minor BPS
50.9
0.01
2
63.84
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000805
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036712
7586512 - 7947116
360605
ENSAPLT00000036119
7586512 - 7947259
360748
ENSAPLT00000044431
7586512 - 7781406
194895