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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7722108_7802122_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7722108 - 7802122
Intron Length:
80015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GTTCCAGTCACT
Flanking Amino Acid:
TCWNGEDVVESYTSRVVSSG
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
71.2
0.53
1
61
37.5
Major PPT
95.9
1.03
0.5
95.6
15.1
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
44.7
-0.3
2.6
71.56
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000805
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036712
7586512 - 7947116
360605
ENSAPLT00000036119
7586512 - 7947259
360748
ENSAPLT00000020834
7570459 - 7947259
376801