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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_782452_783629_F

Intron Information:

Intron Rank:
142948
Intron Class:
major
Intron Phase:
Intron Coordinates:
782452 - 783629
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
CTCTCTGTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
81.4
0.71
0.7
72.9
32
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
45.6
-0.3
2.2
56.83
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027035
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027471
750287 - 784097
33811