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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_782452_792520_F

Intron Information:

Intron Rank:
142946
Intron Class:
major
Intron Phase:
Intron Coordinates:
782452 - 792520
Intron Length:
10069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TTCTACTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
88.2
0.86
0.6
88.7
20.6
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
61.1
0.34
1.7
72.62
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027035
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020176
750287 - 793191
42905