About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_782452_800302_F

Intron Information:

Intron Rank:
142950
Intron Class:
major
Intron Phase:
Intron Coordinates:
782452 - 800302
Intron Length:
17851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
100
1.24
0.5
100
0
Major PPT
71.9
0.49
1
70.5
40.2
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
62.8
0.4
1.8
80.12
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027035
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032937
750287 - 800715
50429