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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_7853067_7883595_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7853067 - 7883595
Intron Length:
30529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
GGTGCCCCAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTTTCCTTATAA
Flanking Amino Acid:
QGSGDRIHTAGVSHALTFCQ
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
59.7
0.22
1
52.4
38
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
66.6
0.52
1.7
76.59
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000805
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036712
7586512 - 7947116
360605