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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8052889_8054497_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8052889 - 8054497
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GCTTTTTTACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.7
0.65
0.8
73.6
36
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
62
0.46
1.6
75.46
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006321
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006582
8045587 - 8253656
208070