Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8266680_8266718_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8266680 - 8266718

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TGT|GCAAGCTGC

5'SS Class:

major

3'SS Sequence:

TTGAAATGATGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AATTGAA

U12 Branch Point Sequence:

TTCTTAGTAAAG

Flanking Amino Acid:

GKESRLQCLCKRKQNYLQPN

Intron Amino Acid Position:

276

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.1

0.24

1.5

56.9

44.6

Major BPS

70.6

0.51

0.9

61.4

36.2

Major PPT

44.7

-0.3

1.7

48.5

47.8

Minor 5ss

35.9

-1.6

4.1

50.7

Minor BPS

-0.5

2.3

57.05

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006546

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041878

8260729 - 8266772

6044