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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8272186_8272336_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8272186 - 8272336
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
CTTTTTCTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTGCTTTTAAAA
Flanking Amino Acid:
VTGGFLFILGGLSSMVAVSW
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.65
0.9
77.3
31.5
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
56.7
0.21
1.4
62.33
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006550
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006800
8272100 - 8272475
376