Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8290572_8291864_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8290572 - 8291864

Intron Length:

1293

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGAGTATC

5'SS Class:

major

3'SS Sequence:

AATGTTTTTACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TATATTTTAATG

Flanking Amino Acid:

TGKFEPSLGASGAIMTVLAA

Intron Amino Acid Position:

289

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.1

74.7

35.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.9

0.67

0.9

72.9

41.4

Minor 5ss

37.8

-1.4

55.7

41.6

Minor BPS

64.2

0.31

1.3

64.56

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006857

8283757 - 8295971

12215