About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8307727_8309960_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8307727 - 8309960
Intron Length:
2234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCACCCCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCCCCCCTCACC
Flanking Amino Acid:
QETSYKADFKIPEVKTRFSP
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
60
0.23
0.9
52.1
32.5
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
47.9
-0.1
2.1
60.5
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021265
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035186
8300361 - 8310038
9678