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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8318759_8320253_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8318759 - 8320253
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATAATGC
Flanking Amino Acid:
ASVIEDMILKATEQLMSDIL
Intron Amino Acid Position:
1292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.68
0.8
74.8
33.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
43.7
-0.5
2.3
62.5
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006672
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030553
8317772 - 8362741
44970
ENSAPLT00000025225
8317255 - 8359759
42505
ENSAPLT00000007000
8317772 - 8362741
44970
ENSAPLT00000047254
8317772 - 8362741
44970
ENSAPLT00000032404
8317255 - 8362741
45487