About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8326577_8327461_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8326577 - 8327461
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAGA
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTTCTTTGAAG
Flanking Amino Acid:
PSPSTASVTKVKMEPDSTGQ
Intron Amino Acid Position:
1035

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.7
40.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78.1
0.63
1
79.4
32.9
Minor 5ss
38.4
-1.3
2.9
49.8
46
Minor BPS
64.9
0.32
1.5
68.4
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006672
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025225
8317255 - 8359759
42505
ENSAPLT00000007000
8317772 - 8362741
44970
ENSAPLT00000047254
8317772 - 8362741
44970
ENSAPLT00000032404
8317255 - 8362741
45487
ENSAPLT00000030553
8317772 - 8362741
44970