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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8333364_8334433_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8333364 - 8334433
Intron Length:
1070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATTTCTGGAGC
Flanking Amino Acid:
TSYILKQTPQGTFLVGQPSP
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
76.2
39.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
66.7
0.38
1.1
63
42.4
Minor 5ss
31.5
-2.1
2.5
37.7
39.6
Minor BPS
52.7
0.07
1.8
66.8
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006672
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025225
8317255 - 8359759
42505
ENSAPLT00000007000
8317772 - 8362741
44970
ENSAPLT00000047254
8317772 - 8362741
44970
ENSAPLT00000032404
8317255 - 8362741
45487
ENSAPLT00000030553
8317772 - 8362741
44970