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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8342551_8347078_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8342551 - 8347078
Intron Length:
4528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCGATGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
CTTACCTGAAAT
Flanking Amino Acid:
PITMSCKIVSGSPTSKLTNV
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
83.7
27.3
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
62.8
0.29
1
56.2
37.9
Minor 5ss
32.5
-2
3.5
48.7
47.5
Minor BPS
63.1
0.49
1.7
79.38
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006672
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047254
8317772 - 8362741
44970