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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8351718_8353372_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8351718 - 8353372
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
CATTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TTCTGCATACAA
Flanking Amino Acid:
SYKPNDLVEVREPPFHLTRR
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
60.3
0.26
1
65.5
28
Major PPT
81.7
0.71
0.9
72.9
41.9
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
44.1
-0.4
2.3
61.2
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006672
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025225
8317255 - 8359759
42505
ENSAPLT00000007000
8317772 - 8362741
44970
ENSAPLT00000047254
8317772 - 8362741
44970
ENSAPLT00000032404
8317255 - 8362741
45487
ENSAPLT00000030553
8317772 - 8362741
44970