Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8353535_8354649_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8353535 - 8354649

Intron Length:

1115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTTAGTATC

5'SS Class:

major

3'SS Sequence:

ATTTCTCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

KKTIVVGNVSKYIPPDKREE

Intron Amino Acid Position:

217

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

80.2

32.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

76.5

0.6

70.2

40.7

Minor 5ss

38.4

-1.3

2.7

48.1

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025225

8317255 - 8359759

42505

ENSAPLT00000007000

8317772 - 8362741

44970

ENSAPLT00000047254

8317772 - 8362741

44970

ENSAPLT00000032404

8317255 - 8362741

45487

ENSAPLT00000030553

8317772 - 8362741

44970