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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8354766_8356448_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8354766 - 8356448
Intron Length:
1683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAGTAA
5'SS Class:
major
3'SS Sequence:
CCCCTACCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCTAC
U12 Branch Point Sequence:
CTTCCCCTACCC
Flanking Amino Acid:
DQRQSRNTGRDSSGVSSSQK
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.2
37.1
Major BPS
43.7
-0.4
1.2
35.7
31.8
Major PPT
69.1
0.43
0.8
65.3
29.3
Minor 5ss
35
-1.7
3.3
37.4
47.4
Minor BPS
51.9
0.04
2
68.8
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006672
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025225
8317255 - 8359759
42505
ENSAPLT00000007000
8317772 - 8362741
44970
ENSAPLT00000047254
8317772 - 8362741
44970
ENSAPLT00000032404
8317255 - 8362741
45487
ENSAPLT00000030553
8317772 - 8362741
44970