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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8356692_8359309_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8356692 - 8359309
Intron Length:
2618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGATT
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AATTACTGGATC
Flanking Amino Acid:
ASAGLLKAGEGTRTCDTTIL
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
84.9
32.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
74.6
0.55
0.9
68.1
37.5
Minor 5ss
37.6
-1.4
3.5
56.9
47.4
Minor BPS
51
0.01
1.7
62.77
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006672
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032404
8317255 - 8362741
45487
ENSAPLT00000030553
8317772 - 8362741
44970
ENSAPLT00000025225
8317255 - 8359759
42505
ENSAPLT00000007000
8317772 - 8362741
44970
ENSAPLT00000047254
8317772 - 8362741
44970