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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8359403_8359543_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8359403 - 8359543
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAGG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATCTCTACTT
Flanking Amino Acid:
KEHEIEVIDQRLIEARRMMD
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
61.4
43.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
86.7
0.82
0.6
83.7
24.6
Minor 5ss
38.3
-1.3
2.9
49
46.8
Minor BPS
54.4
0.22
1.9
77.17
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006672
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032404
8317255 - 8362741
45487
ENSAPLT00000030553
8317772 - 8362741
44970
ENSAPLT00000025225
8317255 - 8359759
42505
ENSAPLT00000007000
8317772 - 8362741
44970
ENSAPLT00000047254
8317772 - 8362741
44970