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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8378785_8378882_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8378785 - 8378882
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
AAATATTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
ACTCCCAGAACA
Flanking Amino Acid:
EMMSPRTRPRRQFYSLFWST
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
66.3
0.41
1
61
37.5
Major PPT
74.6
0.55
1
70.4
44.3
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
52.5
0.07
1.8
65.72
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007034
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007317
8377613 - 8383459
5847