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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8387972_8391376_R

Intron Information:

Intron Rank:
149495
Intron Class:
major
Intron Phase:
Intron Coordinates:
8387972 - 8391376
Intron Length:
3405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TCGTGCTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
77
0.61
0.8
74.6
35.2
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
49.3
-0.1
2
55.61
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027928
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033177
8387752 - 8392489
4738