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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8502066_8519769_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8502066 - 8519769
Intron Length:
17704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAA
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TCCTTCCCAACA
Flanking Amino Acid:
CEKRLSASEKECHGSAVIRT
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.9
32.9
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
65.7
0.35
0.9
60.8
34.9
Minor 5ss
35.9
-1.6
3.3
46.4
48.9
Minor BPS
49.7
-0
1.9
63.62
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031224
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025742
8488025 - 8694625
206601
ENSAPLT00000018945
8486306 - 8693441
207136
ENSAPLT00000034108
8488025 - 8693441
205417