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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8519851_8580260_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8519851 - 8580260
Intron Length:
60410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAGAGT
5'SS Class:
major
3'SS Sequence:
TGTTTATTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
CATTGCTAAATA
Flanking Amino Acid:
TSETRQLHIQTPEPVDNYIS
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
63
42.9
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
78
0.63
0.8
73.3
36.2
Minor 5ss
26.8
-2.7
3.4
39.8
45.8
Minor BPS
50.2
0
2.1
63.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031224
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018945
8486306 - 8693441
207136
ENSAPLT00000036066
8486306 - 8693441
207136
ENSAPLT00000034108
8488025 - 8693441
205417
ENSAPLT00000025742
8488025 - 8694625
206601