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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_8533334_8580260_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8533334 - 8580260
Intron Length:
46927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
CATTGCTAAATA
Flanking Amino Acid:
IMYFLRSFFKTPEPVDNYIS
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
78
0.63
0.8
73.3
36.2
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
50.2
0
2.1
63.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031224
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046893
8533295 - 8693441
160147